BME/EECS 516 - Fall 2004 - Course Web Site

 
 
Course Description:
BME/EECS 516 Medical Imaging Systems

We'll examine, from a systems perspective, the techniques used to form internal images of (living) human bodies.  These imaging systems are used for tasks ranging from cancer detection to basic biophysical and cognitive research, and include planar X-ray and gamma-ray (nuclear medicine) imaging, X-ray tomography, ultrasound, single-photon tomography, positron emission tomography, and magnetic resonance imaging (MRI).

Prerequesites: Linear systems theory, Fourier transforms, Digital Signal Processing.  EECS 451 is formally listed, but many undergrad DSP classes will be sufficient.  The main issues is exposure to spectral analysis, Fourier transforma and sampling.

A working knowledge of Matlab will be necessary.
Recommended Texts: Medical Imaging Systems    
A Macovski (1983, Prentice-Hall) – In N. Campus Bookstore

Principles of Magnetic Resonance Imaging
D Nishimura (1996) – Available for $30 from instructor or from Kristen or Deb in Gerstacker 1107.

Reference Materials
Grading and policies: 10% Homework
60% Projects (20% for each of 3 projects)
30% Final Exam (take home final, Due Dec. 21, 5pm)
Course and grading policies
Instructor: Douglas C. Noll, Ph.D.  
Associate Professor, Biomedical Engineering and Radiology
Phone: (734) 764-9194 
Secretary: (734) 764-9588 
FAX: (734) 936-1905 
email: dnoll@umich.edu
Office: 1088 BIRB (BIRB is across Bonisteel Blvd from Cooley Hall)
    and  2119 Gerstacker (upstairs from the BME department offices)
Mail Box: Main BME Office, 1107 Gerstacker
Lectures: 
Tues/Thurs, 1-2:30 pm, Cooley G906
Office Hours: Tues/Thurs 2:30-3:30 in 2119 Gerstacker
Other times by appointment, generally in 1088 BIRB
Course Web Site: http://www.eecs.umich.edu/~dnoll/BME516/
Syllabus
Preliminary Syllabus
Notes - These files are used by the instructor to prepare lectures.  They may cover more or less than what is presented in class, so these should not be used in lieu of your own notes (though they may same you some time and effort or may be a good review).
1. Introduction
2. Fourier Transform Notes (new stuff on aliasinng)
3. Ultrasound Notes 1  (new - roadmap to US notes)
4. Ultrasound Notes 2
5. Ultrasound Notes 3
6. Ultrasound Notes 4 (for general interest - won't cover these in class)
7. Magnetic Resonance Imaging Notes 1
    a. Movie of 3 spins seeing a different applied magnetic field
    b. Movie of a 90 degree excitation in the laboratory frame
    c. Movie of a 90 degree excitation in the rotating frame
    d. Movie of excitation that doesn't satify the resonance conditions (rotating frame = gamma x B0)
8. MRI Notes 2
9. MRI Notes 3
10. X-ray Notes 1
11. Computed Tomography Notes
12. Emission Computed Tomography
13. X-ray Notes 2


Final Exam 

Comments Regarding Final Exam and Grading

Scores Sorted by Last 4 Digits of UMID

Homework assignments:
1. Homework #1
2. Homework #2, templateh02_1.m, templateh02_3.m, fwhm.m, ft.m
3. Homework #3
4. Homework #4
5. Homework #5
6. Homework #6

Homework Solutions are available on the Ctools site (restricted access).

Projects:
Ultrasound Project, link to files
MRI Project
, link to files
CT Project
, link to files


Useful Links:
Noll's Course Web site from last year (2003)
UM Matlab Tutorials
Fessler's Matlab Primer  
Matlab help from Matlab

1-year licenses for full version of matlab for your PC
Prof. O'Donnell's Course page from 1998

Prof. Fessler's Course page from 1997
Prof. Fesser's Notes from 1997
ISMRM Educational Links for MRI