Journal papers:
5. Acoustic
Characterization of Enhanced Laser-Induced Optical Breakdown
14. Adaptive Correction of Depth Induced Aberrations in Multiphoton Confocal Microscopy using a Deformable Mirror
15. Probing Nanoenvironments Using Functional Chromophores
16. On-Demand Droplet Spotter for Preparing Pico-to Femtoliter Droplets on Surfaces
17.
Atomic Force Microscopy of DNA Molecules
Stretched by Spin-Coating Technique
Anal.
Biochem. 281, 21 (2000).
J. Y. Ye, K. Umemura, M. Ishikawa, and
R. Kuroda
18. Direct Observation of Interactions of Single Fluorescent Nucleotide Analogue Molecules with DNA Polymerase I
19. Enhancement
of Two-Photon Excited Fluorescence Using One-Dimensional Photonic
20. Single Molecules on Quartz Contrasting Highly-Ordered Single Molecules ala Silicon
21. Triphenylmethane Dyes Revealing Heterogeneity of their nanoenvironment: Femtosecond, Picosecond, and Single-Molecule Studies
22. Spectroscopic Properties of 2'-(or-3')-O-(2, 4, 6-Trinitrophenyl) Adenosine 5'-Triphosphate Revealed by Time-Resolved Fluorescence Spectroscopy
23. Grouping of independent single molecules on silicon surfaces
24. Development of a Droplet Generator for Single-Molecule Fluorescence Imaging
25. Bimodal Site Distribution of a Polymer Film Revealed by Flexible Single-Molecule Probes
26. Microscopic Dynamics of Glass Transition Investigated by Time-Resolved Fluorescence Measurements of Doped Chromophores
27. Microscopic Study of Glass Transition: Time-Resolved Fluorescence Measurements of Doped Dye Molecules
28. Glass Transition of Associated Solvents Studied by Fluorescence Measurement of Doped Chromophores
29. Diffusive Torsional Dynamics of Malachite Green Molecules in Solid Matrices Probed by Fluorescence Decay
30. Local Dynamics in Solid Matrices Investigated by Malachite Green Optical Microprobes
31. Gain Due to Level-Dependent Collisions
32. Light Amplification by the Effect of Velocity Redistribution of Particles due to the Level Dependence of Collision Cross Sections
33. Light Gain without Population Inversion due to the Level Dependence of Collision Cross Sections
34. Rate Equation Theory of Light-Induced Drift
35. A New Model on Light Amplification without Population Inversion
36. Calculation of Velocity of Light-Induced Drift
Patents
1. Light enhancement method and device, and their applications in fluorescence detection
J. Y. Ye and M. Ishikawa
Patent: JP
2001-242083,
2. Laser-based method and
system for enhancing optical breakdown
J. Y. Ye, T. B. Norris, L. P. Balogh, J. R. Baker, Jr.
Patent filed in August, 2002, Serial No. 60/407018
3. Acoustic monitoring method and system in
laser-induced optical breakdown
J. Y. Ye, T. B. Norris, L. P. Balogh, J. R. Baker, Jr., M. O’Donnell, S. M. Milas, K. W. Hollman, S. Emelianov
Patent filed in August, 2002, Serial No. 60/406861
4. Enhancing Fiber-Optic Sensing Technique Using a Dual-Core Fiber
J. Y. Ye, T. B. Norris, M. T. Myaing, T. Thomas, J. R. Baker, Jr.
Patent filed in December, 2002, Serial No. 60/434604
5. Double-Clad-Fiber Scanning Microscope
J. Y. Ye, and T. B. Norris
Patent filed in May, 2003, Serial No. 60/474113
News Release
Development of single-molecule fluorescence detection strategies to effective DNA sequencing
Japanese Business and Technology,
Optical fiber carries both excitation and fluorescence light for
biosensing
Laser Focus World, Vol. 38, Issue 11, Newsbreaks, November, 2002
Conference Presentations
5 Invited Talks
1. J. Y. Ye, and M. Ishikawa, Single-Molecule Fluorescence Imaging and Time-Resolved Spectroscopy of a Site-Sensitive Dye Molecule, The JRCAT Workshop on Technology for Identifying & Manipulation Atoms & Molecules; The 2nd Workshop on Scanning Probe and Nanoelectronics, Tsukuba, January. 12-14, 1999.
2. J.
Y. Ye, Single-Molecule Fluorescence Imaging and Time-Resolved Spectroscopy, The
102th Symposium on the Development of Nanotechnology and Its Applications to
Physics and Chemistry ---the Japanese Research Association for Organic
Electronics Materials,
3. J.
Y. Ye, Heterogeneity of Nanoenvironment Revealed by Triphenylmethane Dyes:
Time-Resolved Spectroscopy and Single-Molecule Imaging, The 1st International
Symposium for Chinese Youth Scientists on Atomic and Molecular Physics,
4. T. B. Norris, L. Sherman, O. Albert, and J. Y. Ye (actual speaker), Adaptive optics for multiphoton confocal microscopy, The Optical Society of American 2000 Annual meeting, Providence, Rhode Island, Oct. 22-26, 2000.
5. J. Y. Ye, L. Sherman, O. Albert, and T. B. Norris, Adaptive correction for aberrations in scanning multiphoton confocal microscopy, The Ann Arbor Section Meeting of Optical Society of American, Ann Arbor, Michigan, Feb. 26, 2001.
6. Jing
Yong Ye and T. B. Norris, Reducing laser-induced optical breakdown threshold
with metal nanoparticles, Symposium on Femtosecond Laser micromachining:
Applications in Engineering, Bioengineering and Surgery,
Contributed conference
papers
7. Ye JY, Tse C, Zhody M, Chang G, Hollman K, and O’Donnell M., Baker, Jr. J, and Norris TB, Trapping cavitation bubbles with a self-focused laser beam, CLEO/IQEC conference, San Francisco, CA, May 16-21, 2004.
8. Myaing, M. T., J. Y. Ye, T. B. Norris, T. Thomas, K. Candido, A. Kotlyar, J., Beals, P. Cao, B. Keszler, J. Baker, Jr., "Quantitative, in vivo fluorescence measurements with a two-photon fiber probe", CLEO/IQEC conference, San Francisco, CA, May 16-21, 2004.
9. Tse C, Zhody M, Ye JY, Norris TB, Balogh L, Hollman K, and O’Donnell M., “Monitoring LIOB-induced bubble characteristics in gelatin using high-frequency ultrasound,” Proceedings of the 2004 Conference on Medical Imaging 5373 (2004).
10. Zhody MJ, Tse C, Ye JY, and O’Donnell M, “An ultrasonic method to measure effective temperature in the vicinity of laser-induce optical breakdown, “ Proceedings of the 2003 IEEE Ultrasonics Symposium 03CH37476C, pp. 1103-1106 (2003).
11. Jing Yong Ye, T. B. Norris, L. P. Balogh, J. R. Baker, Jr., S. M. Milas, K. W. Hollman, S. Emelianov , M. O’Donnell, Acoustic Detection of Microbubble Formation in Enhanced Optical Breakdown of Silver/Dendrimer Nanocomposites, Conference on Lasers and Electro-Optics, June 1-6, 2003.
12. Mon Thiri Myaing, Jing Yong Ye, Theodore B. Norris, T. Thomas, A. Kotylar, A. Patri J. Baker, Jr. W.J. Wadsworth, R.M. Percival, G. Bouwmans, J.C. Knight, and P.St.J. Russell, Enhanced Biosensing Using Photonic Crystal Fibers, Conference on Lasers and Electro-Optics, June 1-6, 2003.
13. J.
Y. Ye, M. T., Myaing, T. Thomas, L. Balogh, J. Baker, Jr., and T. B. Norris,
Two-Photon In Vivo Flow Cytometry, Second Principal Investigators Meeting Joint
NCI-NASA Fundamental Technologies for Biomolecular Sensors Program, Chicago,
Illinois, July 28-29, 2003
14. Lajos Balogh, Jing Yong Ye, Theodore B. Norris, James Baker Jr., Susanne Milas, Kyle Hollman, Stanislav Emelianov, Matthew O'Donnell, Optical and acoustic characterization of laser-induced optical breakdown and its enhancement by metal/dendrimer nanocomposites, MSR meeting, December 2-6, 2002, Boston, Massachusetts
15. M. O’Donnell, S. M. Milas, J. Y. Ye, T. B. Norris, L. P. Balogh, J. R. Baker, Jr., K. W. Hollman, S. Emelianov, Acoustic Detection of LIOB in Dendrimer Nanocomposites: Implications for Site Targeted Molecular Diagnostics and Therapeutics, 2002 IEEE International ultrasonic symposium, October 8-11, 2002, Munich, Germany
16. J.
Y. Ye and T. B. Norris, Reducing laser-induced optical breakdown threshold with
metal nanoparticles, Symposium on Femtosecond Laser micromachining:
Applications in Engineering, Bioengineering and Surgery,
17. J. Y. Ye, L. Balogh, and T. B. Norris, Enhancement of laser-induced optical breakdown using metal/dendrimer nanocomposites, Conference on Lasers and Electro-Optics, Long Beach, CA, May 19-24, 2002.
18. J.
Y. Ye, M. T., Myaing, T. Thomas, L. Balogh, J. Baker, Jr., and T. B. Norris,
Imaging and Triggering of Dendrimer Nanocomposites for Cancer Treatements, The
Third Principal Investigators (PI) Meeting Unconventional Innovations Program,
Ellicott City, Maryland, February 25-26,
2002
19. M.
Ishikawa, and J. Y. Ye, Single-molecule imaging and time-resolved fluorometry
of an analog of adenine. ACS National Meeting,
20. L.
Sherman, J. Y. Ye, and T. B. Norris, Adaptive aberration correction for
specimen induced spherical aberration, CLEO,
21. H.
Inouye, M. Arakawa, M. Abe, J. Y. Ye, T. Hattori, and H. Nakatsuka
Optical Field Enhancement in a Total-Reflection-Type 1-D Photonic
22. J. Y. Ye, Y. Yamane, M. Yamauchi, H. Nakatsuka, and M. Ishikawa, Fluorescence Imaging and Time - Resolved Spectroscopy of Individual Interactions between a Nucleotide Analogue and DNA Polymerase I, US-Japan Information Exchange Seminar on Photoconversion and Photosynthesis:Past, Present and Future Prospects, Ozagaki, Japan, November 15-17, 1999.
23. J. Y. Ye, Y. Yamane, M. Yamauchi, H. Nakatsuka, and M. Ishikawa, Direct Observation of Interactions of Single Fluorescent Nucleotide Analogue Molecules with DNA Polymerase I, The 5th International Workshop on "Single Molecule Detection and Ultrasensitive Analysis in the Life Sciences", Berlin, Germany, 29 September - 1 October 1999.
24. J. Y. Ye, Y. Yamane, M. Yamauchi, N. Tsurumachi, H. Nakatsuka, and M. Ishikawa, Enhancement of Two-Photon Excited Fluorescence Using One-Dimensional Photonic Crystals, The Centennial Meeting of American Physics Society, March 20-26,1999, Atlanta, Georgia.
25. Y. Yamane, J. Y. Ye, M. Yamauchi, N. Tsurumachi, H. Nakatsuka, and M. Ishikawa Enhancement of Two-Photon Excited Fluorescence Using One-Dimensional Photonic Crystals (II), The 54th Annual Meeting of Japanese Physics Society, Hiroshima, March 28 - 31, 1999.
26. J.
Y. Ye, M. Ishikawa, and O. Yogi, Single-Molecule Fluorescence Imaging and
Time-Resolved Spectroscopy of a Site-Sensitive Dye Molecule, The 98' JRCAT
International Symposium on Atom Technology,
27. 19. M. Ishikawa, O. Yogi, J. Y. Ye, and T. Yasuda,
Guiding Principles for Construction of Microvials for Single-Molecules on
Surfaces, The 98' JRCAT International Symposium on Atom Technology,
28. O.
Yogi, T. Kawakami, M. Ishikawa, J. Y. Ye, and M. Yamauchi, Arrangement of Micro
Droplets for Preparation of Single Molecules on Surfaces, The 98' JRCAT
International Symposium on Atom Technology,
29. M.
Ishikawa, O. Yogi, J. Y. Ye, and M. Yamauchi, Applications of Single-Molecule
Fluorescence Imaging and Spectroscopy in Analytical Chemistry, The 16th
Biotechnology Symposium,
30. J. Y. Ye, Y. Yamane, M. Yamauchi, N. Tsurumachi, H. Nakatsuka, and M. Ishikawa, Enhancement of Two-Photon Excited Fluorescence of 2-Aminopurine with One-Dimensional Photonic Crystals, The 1998 Autumn Meeting of Japanese Physical Society, Okinawa, September 25-28, 1998.
31. M. Ishikawa, J. Y. Ye, O. Yogi, and M. Yamauchi Single-Molecule Imaging and Spectroscopy for Analytical Chemistry on Surfaces, The 4th International Workshop on Single Molecule Detection and Analysis in Life Sciences, Berlin-Adlershof, September 30 - October 2, 1998.
32. O. Yogi, M. Ishikawa, J. Y. Ye, M. Yamauchi, and T. Kawakami Development of a Droplet Generator for Single-Molecule Fluorescence Imaging, The 1998 Meeting of Organic Material Electronics, Himeji, September 14, 1998.
33. O. Yogi, M. Ishikawa, J. Y. Ye, and M. Yamauchi, Development of a Droplet Generator for Single-Molecule Fluorescence Imaging (II), The 59th Autumn Meeting of the Japan Society of Applied Physics, Hiroshima, September 15-18, 1998.
34. J.
Y. Ye, M. Ishikawa, O. Yogi, T. Okada, and Y. Maruyama, Inhomogeneity of a
Polymer Film Revealed by Fluorescence Imaging and Time-Resolved Spectroscopy of
Single-Molecule Probes, The 1998 March Meeting of American Physics Society,
35. J.
Y. Ye, T. Hattori, H. Nakatsuka, Y. Maruyama, M. Ishikawa, and T. Okada,
Microscopic Dynamics in Glass-Forming Materials Revealed by Fluorescent Probe
Molecules, The 1998 March Meeting of American Physics Society,
36. J. Y. Ye, M. Ishikawa, O. Yogi, T. Okada, and Y. Maruyama, Single-Molecule Fluorescence Imaging and Time-Resolved Spectroscopy of a Site-Sensitive Dye Molecule, The 5th International Workshop on Femtosecond Technology, Tsukuba, Japan, February 12-13, 1998.
37. O.
Yogi, M. Ishikawa, and J. Y. Ye, Development of a Droplet Generator for
Single-Molecule Fluorescence Imaging, International Conference on Optical MEMS
and Their Applications,
38. O.
Yogi, M. Ishikawa, and J. Y. Ye, Development of a Droplet Generator for
Single-Molecule Fluorescence Imaging, The 5th JRCAT International Symposium on
Atom Technology,
39. M. Ishikawa, J. Y. Ye, O. Yogi, and Y. Maruyama, Enhancement of Fluorescence Efficiency for Single-Molecule Imaging, The 5th JRCAT International Symposium on Atom Technology, Tokyo, Japan, November 26, 1997
40. O.
Yogi, M. Ishikawa, and J. Y. Ye, Development of a Droplet Generator for
Single-Molecule Fluorescence Imaging, The 15th Biotechnology Symposium,
41. M.
Ishikawa, O. Yogi, J. Y. Ye, and Y. Maruyama, Fluorescence Enhancement of
Nucleic-Acid Bases for Single-Molecule Fluorescence Imaging, The 15th
Biotechnology Symposium,
42. O. Yogi, M. Ishikawa, and J. Y. Ye, Development of a Droplet Generator for Single-Molecule Imaging, The 58th Autumn Meeting of the Japan Society of Applied Physics, Akida, October 2-5, 1997.
43. S.
Sekine, Y. Hirai, J. Y. Ye, T. Hattori, H. Nakatsuka, Measurements of
Fluorescence Lifetime of Dye Molecules Doped in Biological Tissues, The 52th
Annual Meeting of Japanese Physics Society,
44. S.
Sekine, J. Y. Ye, T. Hattori, H. Nakatsuka Fluorescence Lifetime of
Chromophores Doped in Biological Tissues, The 4th International Workshop on
Femtosecond Technology,
45. H. Nakatsuka, J. Y. Ye, T. Hattori, Y. Maruyama, and M. Ishikawa, Microscopic Study of Glass Transition: A Time-Resolved Fluorescence Measurement of Doped Dye Molecules, Yukawa International Seminar 1996, Dynamics of Glass Transition and Related Topics, Kyoto, Japan, November 12-15, 1996.
46.
47. J.
Y. Ye, Y. Maruyama and M. Ishikawa, T.
Hattori, and H. Nakatsuka, Study of Glass Transition Using
Fluorescence-Lifetime Measurement of a Molecular Probe, The 51th Annual Meeting
of Japanese Physics Society,
48. J. Y. Ye, T. Hattori, H. Nakatsuka, Y. Maruyama and M. Ishikawa, Torsional Dynamics of Malachite Green in Polybutadiene Melt, International Workshop on Femtosecond Technology, Tsukuba, Japan, February 21-22, 1996.
49. J.
Y. Ye, H. Inouye, H. Ueta, T. Hattori, H. Nakatsuka, Study of Phase Transition
in Organic Glasses Using a Fluorescent Probe II, The 50th Annual Meeting of
Japanese Physical Society,
50. H. Inouye, J. Y. Ye, H. Ueta, T. Hattori, H. Nakatsuka, Study of Phase Transition in Organic Glasses Using a Fluorescent Probe I, The 1994 Autumn Meeting of Japanese Physical Society, Shizuoka, September 2 -5, 1994.
51. K.
M. Abedin, J. Y. Ye, H. Inouye, T. Hattori, and
H. Nakatsuka, Local Dynamics in Solid Matrices Investigated by Malachite
Green Optical Microprobes, Spectral Hole-Burning and Related Spectroscopies:
Science and Applications,
52. J. Y. Ye, K. M. Abedin, H. Inouye, T. Hattori, and H. Nakatsuka, Ultrafast Dynamics of Malachite Green in Porous Glasses, The 49th Annual Meeting of Japanese Physical Society, Fukuoka, March 28 - 31, 1994.
53. K.
M. Abedin, J. Y. Ye, H. Inouye, T. Hattori, and
H. Nakatsuka Ultrafast Dynamics of Malachite Green Doped in Solid
Matrices, The 48th Annual Meeting of Japanese Physical Society,
54. Y.
Liu, G. S. Cheng, J. Y. Ye, and J. Y. Cai Diode Laser Probing of the
Collisional Energy Transfer from Highly Excited NO2 to NH3 Molecules,
CLEO/QELS'93 Conference,
55. J. Y. Ye, M. S. Zhan, and S. K. Zhou, Light Gain without Population Inversion due to the Level Dependence of Collision Cross Sections, The 1992 Shanghai International Symposium on Quantum Optics, March 29 - April 2, 1992, Proc. SPIE-Int. Soc. Opt. Eng. 1726, 532 (1992).
56. J. Y. Ye, M. S. Zhan, and S. K. Zhou, A New Model of Light Amplification without Population Inversion, The Fifth National Quantum Optics Conference, Shanghai, March 26 - 28, 1992
57. J. Y. Ye, L. S. Yang, and Y. Q. Lu, A Simplified Model on the Calculation of the Velocity of Light-Induced Drift, The Tenth National Laser Science Conference, Fuhehaote, August 12-15, 1990
58. J. Y. Ye, Light-Induced Drift Effect of Gaseous Molecules, Conference on "Excellent Theses in Optics Branch of Academia Sinica", Shanghai, October 1990.
59. J.
Y. Ye, L. S. Yang, and Y. Q. Lu, Entropy Change in the Light-Induced Drift
Process, The Sixth Interdisciplinary Laser Science Conference,
60. J.
Y. Ye, Y. Q. Lu, P. A. Huang, and Y. C. Zhang, A New Fluorescence Spectrum
Study of N2O, The Forth International Laser Science Conference,